I have been scouring the interwebs for this answer and I am at my wits end.
Will a Shapeoko run a 3d file in the form of an STL or 3Dclip file? If not, is there anything special I will have to do to convert it to Gcode for my machine?
The main page has a link to a page which discusses file formats: http://www.shapeoko.com/wiki/index.php/File_formats (EDIT: and AFAICT, it’s the top search result for “supported file types shapeoko 3” on Google and Bing and DuckDuckGo and AOL)