So I imported my svg file into CC, set up stock and created toolpaths. Saved GCode. Used my probe to set xyz using the standard #102 end mill. Then changed to my 1mm end mill and set Z again.
When I run the simulation on Camotics, it seems to work fine but when I actually start to cut, the end mill starts by going almost right through the material and starts to cut at at a much deeper depth. I immediately pause and stop cutting.