Shapeoko 4XL square issue?

For the SO4, like the SO3 before it, the big considerations are:

  • are the Y-axis rails level to each other and parallel
  • is the X-axis gantry level to the Y-axis rails and at a right angle to them
  • is the Z-axis carriage level and plumb

So long as all the parts have the correct mechanical geometry, then they should run squarely and cut as expected.

You may want to consider calibrating for belt stretch: